latest version: 2022.1

Tutorials (PDF)

Here is a link to a tutorial (PDF) explaining basic use cases in CellNetAnalyzer . These use cases are also demonstrated in the video tutorials below.

In addition, this tutorial (PDF) explains how (genome-scale) metabolic models can be reconstructed from DNA sequences.

Video tutorials

The video tutorials are listed below and can also be found on youtube .

Tutorial 1: Starting CNA, loading network projects, flux analysis and flux variability analysis

This video shows how to start CellNetAnalyzer, to load a project, to use the network composer, and to perform metabolic flux analysis and flux variability analysis.

Tutorial 2: Flux optimization (flux balance analysis)

This video demonstrates how optimal flux distributions can be calculated in CNA (flux balance analysis).

Tutorial 3: Elementary modes and minimal cut sets

In this video we compute elementary modes, select subsets of modes that satisfy specific conditions, and learn how to calculate important features of elementary modes (yield distribution, 2D-yield-space plot and others) and how to compute minimal cut sets associated with a given set of elementary modes.

Tutorial 4: Constrained minimal cut sets

In this video we learn how to calculate constrained minimal cut sets (example: intervention strategies for growth-coupled synthesis of ethanol in E. coli).

Tutorial 5: Editing the network structure

This video demonstrates how the network structure can be modified with the network composer.

Tutorial 6: Exporting/Importing SBML models and creation of new projects

This video demonstrates import and export of SBML models in CellNetAnalyzer and how new projects can be generated.

Tutorial 7: Application Programming Interface (API)

This video shows example use cases of the Application Programming Interface of CellNetAnalyzer.